Index

A

add_errors() (tomotok.core.tools.data.DataHandler method) add_patch() (tomotok.gui.roi.GraphContours method) Algebraic (class in tomotok.core.inversions.lame)

AnalyzerApp (class in tomotok.gui.apps) AnalyzerMenu (class in tomotok.gui.menus) average() (tomotok.core.tools.data.DataHandler method)

B

bb_row_raise() (tomotok.gui.widgets.GraphWindow method) BOB

Bob (class in tomotok.core.inversions.bob) butter_bandpass_filter() (tomotok.core.tools.data.DataHandler method)

C

calcam_sparse_line_3d() (in module tomotok.core.geometry.generators) camera center_mesh (tomotok.core.geometry.grids.RegularGrid attribute) centre (tomotok.core.geometry.grids.RegularGrid attribute) change_sync() (tomotok.gui.widgets.MasterControls method) channel check_gmat() (in module tomotok.core.tools.checkers) CholmodBob (class in tomotok.core.inversions.bob) CholmodFixt (class in tomotok.core.inversions.fixed) CholmodMfr (class in tomotok.core.inversions.mfr) chord clear_patch() (tomotok.gui.roi.GraphContours method) compute() (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method)

compute_aniso_dmats() (in module tomotok.core.derivative) compute_bd_mat() (tomotok.core.io.diag.Dsystem method) compute_iso_dmats() (in module tomotok.core.derivative) compute_power() (in module tomotok.core.tools.postproc) compute_sparse_lines() (tomotok.core.geometry.handler.GmatHandler method) compute_weight_matrix() (tomotok.core.io.tokamaks.Tokamak method) ConsoleText (class in tomotok.gui.widgets) ConsoleWindow (class in tomotok.gui.widgets) corners() (tomotok.core.geometry.grids.RegularGrid method) crop_data() (tomotok.core.tools.data.DataHandler method) cs_to_hdf() (in module tomotok.core.tools.hdf)

D

data_name (tomotok.core.io.diag.Dsystem attribute) DataHandler (class in tomotok.core.tools.data) decompose() (tomotok.core.inversions.bob.Bob method) (tomotok.core.inversions.bob.CholmodBob method) (tomotok.core.inversions.bob.SimpleBob method) (tomotok.core.inversions.bob.SparseBob method) (tomotok.core.inversions.lame.Algebraic method) (tomotok.core.inversions.lame.FastAlgebraic method) (tomotok.core.inversions.lame.GevFastAlgebraic method) (tomotok.core.inversions.lame.QrFastAlgebraic method) (tomotok.core.inversions.lame.SvdFastAlgebraic method) decrease_pcount() (tomotok.gui.roi.GraphContours method)

derivative_matrix() (in module tomotok.core.derivative) DerivMatChecker (class in tomotok.core.tools.checkers) detector determine_regularisation() (tomotok.core.inversions.mfr.Mfr method) dia_to_hdf() (in module tomotok.core.tools.hdf) DiagGraphWindow (class in tomotok.gui.widgets_tomo) distance_mat() (in module tomotok.core.geometry.analytical) do() (tomotok.gui.apps.AnalyzerApp method) (tomotok.gui.apps.SelectorApp method) download_data() (tomotok.core.io.diag.Dsystem method) download_mag_field() (tomotok.core.io.tokamaks.Tokamak method) downsample() (tomotok.core.tools.data.DataHandler method) Dsystem (class in tomotok.core.io.diag)

E

errors_scalar_multiply() (tomotok.core.tools.data.DataHandler method) expand() (tomotok.gui.apps.AnalyzerApp method)

ExpandMenu (class in tomotok.gui.menus) extent (tomotok.core.geometry.grids.RegularGrid attribute)

F

FastAlgebraic (class in tomotok.core.inversions.lame) fetch() (tomotok.core.geometry.handler.GmatHandler method) fetch_data() (tomotok.core.io.diag.Dsystem method) fetch_mag_field() (tomotok.core.io.tokamaks.Tokamak method)

find_alpha() (tomotok.core.inversions.lame.Algebraic method) (tomotok.core.inversions.lame.FastAlgebraic method) Fixt (class in tomotok.core.inversions.fixed) fourier() (tomotok.core.tools.data.DataHandler method) from_hdf() (in module tomotok.core.io.support)

G

gauss() (in module tomotok.core.phantoms) gauss_iso() (in module tomotok.core.phantoms) generate_anizo_matrix() (in module tomotok.core.derivative) generate_directions() (in module tomotok.core.geometry.los) generate_iso_dmat() (in module tomotok.core.derivative) generate_los() (in module tomotok.core.geometry.los) get_calb() (tomotok.core.io.diag.Dsystem method) get_chord_geometry() (tomotok.core.io.diag.Dsystem method) get_chord_widening() (tomotok.core.io.diag.Dsystem method) get_ctrl() (tomotok.gui.apps.AnalyzerApp method) get_divertor_area() (tomotok.core.io.tokamaks.Tokamak method) get_divertor_chnls() (tomotok.core.io.tokamaks.Tokamak method) get_index_shift() (in module tomotok.core.derivative) get_levels() (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) get_mval() (tomotok.gui.widgets_tomo.DiagGraphWindow method) (tomotok.gui.widgets_tomo.GraphRgb method) get_pinholes() (tomotok.core.io.diag.Dsystem method)

get_pnum() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) get_predef() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) get_rgbval() (tomotok.gui.widgets_tomo.GraphRgb method) GevFastAlgebraic (class in tomotok.core.inversions.lame) GmatHandler (class in tomotok.core.geometry.handler) go_next() (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets.MasterControls method) go_prev() (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets.MasterControls method) go_to() (tomotok.gui.widgets.GraphWindow method) GraphContours (class in tomotok.gui.roi) GraphMerfer (class in tomotok.gui.merfer) GraphPower (class in tomotok.gui.widgets_tomo) GraphProfiler (class in tomotok.gui.profiler) GraphRectangles (class in tomotok.gui.roi) GraphRgb (class in tomotok.gui.widgets_tomo) GraphWindow (class in tomotok.gui.widgets)

H

hdf_to_cs() (in module tomotok.core.tools.hdf)

hdf_to_dia() (in module tomotok.core.tools.hdf) hdf_to_sparse() (in module tomotok.core.tools.hdf)

I

init_datarange() (tomotok.gui.widgets.GraphWindow method) interpolate() (tomotok.core.tools.data.DataHandler method) interpolate_mag_field() (tomotok.core.io.tokamaks.Tokamak static method) invert() (tomotok.core.inversions.fixed.Fixt method) (tomotok.core.inversions.lame.Algebraic method) (tomotok.core.inversions.mfr.Mfr method)

is_inside() (tomotok.core.geometry.grids.RegularGrid method) is_inside_any() (tomotok.core.geometry.grids.RegularGrid method) islands() (in module tomotok.core.phantoms) iso_psi() (in module tomotok.core.phantoms)

L

LAME laplace_matrix() (in module tomotok.core.derivative) launcher() (in module tomotok.gui.apps) lbox_selection() (tomotok.gui.widgets.GraphWindow method) line of sight lines_len() (in module tomotok.core.geometry.analytical) load_border() (tomotok.core.io.diag.Dsystem method) load_boundary_coord() (tomotok.core.io.diag.Dsystem method)

load_data() (tomotok.core.io.diag.Dsystem method) load_decomposition() (tomotok.core.inversions.bob.Bob method) load_dense() (tomotok.core.geometry.handler.GmatHandler method) load_los() (tomotok.core.io.diag.Dsystem method) load_mag_field() (tomotok.core.io.tokamaks.Tokamak method) load_sparse_gmat() (in module tomotok.core.geometry.io) log_update() (tomotok.gui.widgets.ConsoleText method) lower_pcount() (tomotok.gui.roi.GraphRectangles method)

M

mag_name (tomotok.core.io.tokamaks.Tokamak attribute) make_bol() (tomotok.gui.apps.AnalyzerApp method) make_cnt() (tomotok.gui.apps.AnalyzerApp method) make_mc() (tomotok.gui.apps.AnalyzerApp method) make_mrf() (tomotok.gui.apps.AnalyzerApp method) (tomotok.gui.apps.SelectorApp method) make_ntr() (tomotok.gui.apps.AnalyzerApp method) make_patch() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) make_prf() (tomotok.gui.apps.AnalyzerApp method) make_pwr() (tomotok.gui.apps.AnalyzerApp method)

make_rec() (tomotok.gui.apps.AnalyzerApp method) make_rgb() (tomotok.gui.apps.AnalyzerApp method) make_sxr() (tomotok.gui.apps.AnalyzerApp method) MasterControls (class in tomotok.gui.widgets) median_filter() (tomotok.core.tools.data.DataHandler method) MFR Mfr (class in tomotok.core.inversions.mfr) move_limits() (tomotok.gui.roi.GraphContours method) moveh() (tomotok.gui.roi.GraphRectangles method) movew() (tomotok.gui.roi.GraphRectangles method) movex() (tomotok.gui.roi.GraphRectangles method) movey() (tomotok.gui.roi.GraphRectangles method)

N

node nodevol (tomotok.core.geometry.grids.RegularGrid attribute)

normalise() (tomotok.core.inversions.bob.Bob method) normalize() (tomotok.gui.widgets_tomo.GraphPower method) normalize_gmat() (tomotok.core.inversions.lame.Algebraic method)

O

onclick() (tomotok.core.tools.checkers.DerivMatChecker method)

P

pixel plot() (in module tomotok.core.tools.postproc) (tomotok.gui.merfer.GraphMerfer method) (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets_tomo.DiagGraphWindow method) (tomotok.gui.widgets_tomo.GraphPower method) (tomotok.gui.widgets_tomo.GraphRgb method)

plot_chnls() (tomotok.core.tools.data.DataHandler method) plot_contour() (tomotok.gui.profiler.GraphProfiler method) plot_time() (tomotok.core.tools.data.DataHandler method) polar_phase() (in module tomotok.core.phantoms) prepare_mag_data() (in module tomotok.core.derivative) presolve() (tomotok.core.inversions.lame.Algebraic method) projection_space() (in module tomotok.core.tools.projection) pselect() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) px_norm() (in module tomotok.core.derivative)

Q

QrFastAlgebraic (class in tomotok.core.inversions.lame)

R

raise_pcount() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) reconstruction plane reduce_dmats() (in module tomotok.core.derivative) RegularGrid (class in tomotok.core.geometry.grids) regularisation_matrix() (tomotok.core.inversions.fixed.Fixt method) (tomotok.core.inversions.lame.Algebraic method) (tomotok.core.inversions.mfr.Mfr method) remove_below() (tomotok.core.tools.data.DataHandler method)

remove_chnls() (tomotok.core.tools.data.DataHandler method) remove_nan_chnls() (tomotok.core.tools.data.DataHandler method) remove_patch() (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) remove_zero_chnls() (tomotok.core.tools.data.DataHandler method) reset() (tomotok.core.tools.data.DataHandler method) rlims (tomotok.core.geometry.grids.RegularGrid attribute) rot_h() (in module tomotok.core.geometry.los) rot_v() (in module tomotok.core.geometry.los)

S

save() (tomotok.gui.merfer.GraphMerfer method) (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets_tomo.DiagGraphWindow method) (tomotok.gui.widgets_tomo.GraphPower method) (tomotok.gui.widgets_tomo.GraphRgb method) save_data() (tomotok.core.io.diag.Dsystem static method) save_decomposition() (tomotok.core.inversions.bob.Bob method) save_dense() (tomotok.core.geometry.handler.GmatHandler method) save_mag_field() (tomotok.core.io.tokamaks.Tokamak static method) save_nth() (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) save_sparse_gmat() (in module tomotok.core.geometry.io) select1() (tomotok.gui.apps.SelectorApp method) select2() (tomotok.gui.apps.SelectorApp method) select3() (tomotok.gui.apps.SelectorApp method) selectm() (tomotok.gui.apps.SelectorApp method) SelectorApp (class in tomotok.gui.apps) SelectorMenu (class in tomotok.gui.menus) series_expansion() (tomotok.core.inversions.lame.Algebraic method) set_scrl() (tomotok.gui.widgets.ConsoleText method) set_slices() (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets.MasterControls method)

set_vals() (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets.MasterControls method) shape (tomotok.core.geometry.grids.RegularGrid attribute) shapely_line_mat() (in module tomotok.core.geometry.analytical) shapely_poly_mat() (in module tomotok.core.geometry.analytical) SimpleBob (class in tomotok.core.inversions.bob) size (tomotok.core.geometry.grids.RegularGrid attribute) slider_move() (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets.MasterControls method) smoothing_mat() (tomotok.core.inversions.fixed.Fixt method) (tomotok.core.inversions.mfr.Mfr method) solve() (tomotok.core.inversions.fixed.CholmodFixt method) (tomotok.core.inversions.fixed.Fixt static method) (tomotok.core.inversions.mfr.CholmodMfr method) (tomotok.core.inversions.mfr.Mfr static method) sparse_line() (in module tomotok.core.geometry.generators) sparse_line_3d() (in module tomotok.core.geometry.generators) sparse_to_hdf() (in module tomotok.core.tools.hdf) SparseBob (class in tomotok.core.inversions.bob) start() (tomotok.gui.widgets.ConsoleText method) (tomotok.gui.widgets.ConsoleWindow method) stop() (tomotok.gui.widgets.ConsoleText method) (tomotok.gui.widgets.ConsoleWindow method) SvdFastAlgebraic (class in tomotok.core.inversions.lame)

T

thresholding() (tomotok.core.inversions.bob.Bob method) to_hdf() (in module tomotok.core.io.support) Tokamak (class in tomotok.core.io.tokamaks) tomotok (module) tomotok.core (module) tomotok.core.derivative (module) tomotok.core.geometry (module) tomotok.core.geometry.analytical (module) tomotok.core.geometry.generators (module) tomotok.core.geometry.grids (module) tomotok.core.geometry.handler (module) tomotok.core.geometry.io (module) tomotok.core.geometry.los (module) tomotok.core.inversions (module) tomotok.core.inversions.bob (module) tomotok.core.inversions.fixed (module) tomotok.core.inversions.lame (module) tomotok.core.inversions.mfr (module)

tomotok.core.io (module) tomotok.core.io.diag (module) tomotok.core.io.support (module) tomotok.core.io.tokamaks (module) tomotok.core.phantoms (module) tomotok.core.tools (module) tomotok.core.tools.checkers (module) tomotok.core.tools.data (module) tomotok.core.tools.hdf (module) tomotok.core.tools.postproc (module) tomotok.core.tools.projection (module) tomotok.gui (module) tomotok.gui.apps (module) tomotok.gui.menus (module) tomotok.gui.merfer (module) tomotok.gui.profiler (module) tomotok.gui.roi (module) tomotok.gui.widgets (module) tomotok.gui.widgets_tomo (module)

U

update() (tomotok.core.tools.checkers.DerivMatChecker method) update_data() (tomotok.gui.merfer.GraphMerfer method) (tomotok.gui.profiler.GraphProfiler method) (tomotok.gui.roi.GraphContours method) (tomotok.gui.roi.GraphRectangles method) (tomotok.gui.widgets.GraphWindow method) (tomotok.gui.widgets_tomo.DiagGraphWindow method) (tomotok.gui.widgets_tomo.GraphPower method) (tomotok.gui.widgets_tomo.GraphRgb method)

update_graph() (tomotok.gui.widgets.GraphWindow method)

V

voxel

W

write() (tomotok.gui.widgets.ConsoleText method)

Z

zlims (tomotok.core.geometry.grids.RegularGrid attribute)