Index

_

__call__() (tomotok.inversions.base.Inversion method) (tomotok.inversions.base.RegularisedInversion method) (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) (tomotok.inversions.mfr.MinimumFisherRegularisation method) (tomotok.inversions.MinimumFisherRegularisation method) (tomotok.inversions.solvers.base.Solver method) (tomotok.inversions.solvers.Solver method)

A

Algebraic (class in tomotok.inversions.lame) all_direction_derivative_matrices() (in module tomotok.regularisations.derivatives)

anisotropic_derivative_matrix() (in module tomotok.regularisations.derivatives) AnisotropicDerivativeChecker (class in tomotok.tools.checkers)

B

BOB Bob (class in tomotok.inversions) (class in tomotok.inversions.bob)

border_mesh (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property)

C

calcam_sparse_line() (in module tomotok.geometry) (in module tomotok.geometry.generators) calcam_sparse_line_3d() (in module tomotok.geometry.generators) camera center_mesh (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) centre (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) channel channel_numbers (tomotok.tools.containers.Signals attribute) CholeskySolver (class in tomotok.inversions) (class in tomotok.inversions.solvers) (class in tomotok.inversions.solvers.scipy)

chord compensate_matrix() (in module tomotok.regularisations.derivatives) compute_coordinates() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) coords_r() (tomotok.tools.containers.Sightlines method) coords_z() (tomotok.tools.containers.Sightlines method) corners() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) cs_to_hdf() (in module tomotok.tools.hdf) CvxpyNNLS (class in tomotok.inversions.solvers.cvxpy) cylindrical_coords() (tomotok.tools.containers.Sightlines method)

D

decompose() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) (tomotok.inversions.GevAlgebraic method) (tomotok.inversions.lame.Algebraic method) (tomotok.inversions.lame.GevAlgebraic method) (tomotok.inversions.lame.SvdAlgebraic method) (tomotok.inversions.SvdAlgebraic method) dense_line() (in module tomotok.geometry) (in module tomotok.geometry.generators) derivative_matrix() (in module tomotok.regularisations.derivatives) detector

determine() (tomotok.inversions.base.FixedSelector method) (tomotok.inversions.base.PearsonSelector method) (tomotok.inversions.base.RegularisationSelector method) (tomotok.inversions.FastSelector method) (tomotok.inversions.FixedSelector method) (tomotok.inversions.lame.FastSelector method) (tomotok.inversions.PearsonSelector method) determine_regularisation() (tomotok.inversions.base.RegularisedInversion method) dia_to_hdf() (in module tomotok.tools.hdf) Diagnostic (class in tomotok.tools) (class in tomotok.tools.io.diagnostics) divertor_weighted_matrix() (in module tomotok.tools.divertor)

E

elliptical_flux() (in module tomotok.tools.phantoms) end_points (tomotok.tools.containers.Sightlines attribute)

extent (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property)

F

faces (tomotok.geometry.Grid attribute) (tomotok.geometry.grids.Grid attribute) (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property)

FastSelector (class in tomotok.inversions) (class in tomotok.inversions.lame) FixedSelector (class in tomotok.inversions) (class in tomotok.inversions.base) flux (tomotok.tools.containers.Magnetics attribute)

G

gauss() (in module tomotok.tools.phantoms) gauss_iso() (in module tomotok.tools.phantoms) gaussian_on_flux() (in module tomotok.tools.phantoms) generate_directions() (in module tomotok.geometry.sightlines) generate_los() (in module tomotok.geometry.sightlines) generate_sightlines() (in module tomotok.geometry) (in module tomotok.geometry.sightlines)

get_divertor_channels() (in module tomotok.tools.divertor) GevAlgebraic (class in tomotok.inversions) (class in tomotok.inversions.lame) Grid (class in tomotok.geometry) (class in tomotok.geometry.grids) grid (tomotok.tools.containers.Reconstruction attribute)

H

hdf_to_cs() (in module tomotok.tools.hdf)

hdf_to_dia() (in module tomotok.tools.hdf) hdf_to_sparse() (in module tomotok.tools.hdf)

I

inside_corners() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) interpolate() (tomotok.tools.containers.Magnetics method) Inversion (class in tomotok.inversions.base) invert() (tomotok.inversions.base.RegularisedInversion method) (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) (tomotok.inversions.lame.Algebraic method) (tomotok.inversions.Tikhonov method) (tomotok.inversions.tikhonov.Tikhonov method)

is_inside() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) is_inside_all() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) is_inside_any() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) is_inside_center() (tomotok.geometry.grids.RegularGrid method) (tomotok.geometry.RegularGrid method) islands() (in module tomotok.tools.phantoms) iso_psi() (in module tomotok.tools.phantoms)

J

JaxCholesky (class in tomotok.inversions.solvers.jax)

JaxNNLS (class in tomotok.inversions.solvers.jax) JaxSolver (class in tomotok.inversions.solvers.jax)

L

LAME laplace_matrix() (in module tomotok.regularisations.derivatives) line of sight load_data() (tomotok.tools.Diagnostic method) (tomotok.tools.io.diagnostics.Diagnostic method) load_decomposition() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method)

load_dense_gmat() (in module tomotok.geometry) (in module tomotok.geometry.io) load_magnetic_field() (tomotok.tools.io.tokamaks.Tokamak method) (tomotok.tools.Tokamak method) load_sparse_gmat() (in module tomotok.geometry) (in module tomotok.geometry.io) LSQSolver (class in tomotok.inversions.solvers.scipy)

M

Magnetics (class in tomotok.tools.containers) method (tomotok.inversions.FastSelector property) (tomotok.inversions.lame.FastSelector property) MFR MinimumFisherRegularisation (class in tomotok.inversions) (class in tomotok.inversions.mfr) module tomotok.core tomotok.geometry tomotok.geometry.generators tomotok.geometry.grids tomotok.geometry.io tomotok.geometry.sightlines tomotok.inversions tomotok.inversions.base tomotok.inversions.bob tomotok.inversions.lame tomotok.inversions.mfr tomotok.inversions.solvers tomotok.inversions.solvers.base tomotok.inversions.solvers.cvxpy tomotok.inversions.solvers.jax tomotok.inversions.solvers.optax tomotok.inversions.solvers.scipy tomotok.inversions.solvers.sksparse tomotok.inversions.tikhonov tomotok.regularisations tomotok.regularisations.derivatives tomotok.regularisations.matrices tomotok.tools tomotok.tools.checkers tomotok.tools.containers tomotok.tools.divertor tomotok.tools.hdf tomotok.tools.io tomotok.tools.io.diagnostics tomotok.tools.io.tokamaks tomotok.tools.phantoms

N

NNLSSolver (class in tomotok.inversions.solvers) (class in tomotok.inversions.solvers.scipy)

node normalise() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method)

O

onclick() (tomotok.tools.checkers.AnisotropicDerivativeChecker method)

OptaxNN (class in tomotok.inversions.solvers.optax) OptaxNNLS (class in tomotok.inversions.solvers.optax)

P

PearsonSelector (class in tomotok.inversions) (class in tomotok.inversions.base)

pixel polar_phase() (in module tomotok.tools.phantoms) polar_phase_matrix() (in module tomotok.tools.phantoms)

R

radial (tomotok.tools.containers.Magnetics attribute) Reconstruction (class in tomotok.tools.containers) reconstruction plane reduce_matrix() (in module tomotok.regularisations.derivatives) regular_elliptical_flux() (in module tomotok.tools.phantoms) RegularGrid (class in tomotok.geometry) (class in tomotok.geometry.grids)

RegularisationSelector (class in tomotok.inversions.base) RegularisedInversion (class in tomotok.inversions.base) rlims (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) rot_h() (in module tomotok.geometry.sightlines) rot_v() (in module tomotok.geometry.sightlines)

S

s (tomotok.inversions.lame.Algebraic attribute) save_decomposition() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) save_dense_gmat() (in module tomotok.geometry) (in module tomotok.geometry.io) save_los() (in module tomotok.geometry.sightlines) save_sparse_gmat() (in module tomotok.geometry) (in module tomotok.geometry.io) shape (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) Sightlines (class in tomotok.tools.containers) Signals (class in tomotok.tools.containers) size (tomotok.geometry.Grid property) (tomotok.geometry.grids.Grid property) (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) SksparseCholesky (class in tomotok.inversions.solvers.sksparse) solve() (tomotok.inversions.bob.SparseInvSolver method) (tomotok.inversions.CholeskySolver method) (tomotok.inversions.solvers.base.Solver method) (tomotok.inversions.solvers.CholeskySolver method) (tomotok.inversions.solvers.cvxpy.CvxpyNNLS method) (tomotok.inversions.solvers.jax.JaxCholesky method) (tomotok.inversions.solvers.jax.JaxNNLS method) (tomotok.inversions.solvers.jax.JaxSolver method) (tomotok.inversions.solvers.NNLSSolver method) (tomotok.inversions.solvers.optax.OptaxNN method) (tomotok.inversions.solvers.optax.OptaxNNLS method) (tomotok.inversions.solvers.scipy.CholeskySolver method) (tomotok.inversions.solvers.scipy.LSQSolver method) (tomotok.inversions.solvers.scipy.NNLSSolver method) (tomotok.inversions.solvers.sksparse.SksparseCholesky method) (tomotok.inversions.solvers.Solver method) (tomotok.inversions.SparseInvSolver method)

Solver (class in tomotok.inversions.solvers) (class in tomotok.inversions.solvers.base) solver (tomotok.inversions.base.Inversion property) sparse_line() (in module tomotok.geometry) (in module tomotok.geometry.generators) sparse_line_3d() (in module tomotok.geometry.generators) sparse_to_hdf() (in module tomotok.tools.hdf) SparseInvSolver (class in tomotok.inversions) (class in tomotok.inversions.bob) standard_anisotropic_derivative_matrices() (in module tomotok.regularisations.derivatives) start_points (tomotok.tools.containers.Sightlines attribute) step() (tomotok.inversions.solvers.optax.OptaxNN method) SvdAlgebraic (class in tomotok.inversions) (class in tomotok.inversions.lame)

T

thresholding() (tomotok.inversions.Bob method) (tomotok.inversions.bob.Bob method) Tikhonov (class in tomotok.inversions) (class in tomotok.inversions.tikhonov) time_axis (tomotok.tools.containers.Magnetics attribute) (tomotok.tools.containers.Reconstruction attribute) (tomotok.tools.containers.Signals attribute) Tokamak (class in tomotok.tools) (class in tomotok.tools.io.tokamaks) tomotok.core module tomotok.geometry module tomotok.geometry.generators module tomotok.geometry.grids module tomotok.geometry.io module tomotok.geometry.sightlines module tomotok.inversions module tomotok.inversions.base module tomotok.inversions.bob module tomotok.inversions.lame module tomotok.inversions.mfr module tomotok.inversions.solvers module tomotok.inversions.solvers.base module

tomotok.inversions.solvers.cvxpy module tomotok.inversions.solvers.jax module tomotok.inversions.solvers.optax module tomotok.inversions.solvers.scipy module tomotok.inversions.solvers.sksparse module tomotok.inversions.tikhonov module tomotok.regularisations module tomotok.regularisations.derivatives module tomotok.regularisations.matrices module tomotok.tools module tomotok.tools.checkers module tomotok.tools.containers module tomotok.tools.divertor module tomotok.tools.hdf module tomotok.tools.io module tomotok.tools.io.diagnostics module tomotok.tools.io.tokamaks module tomotok.tools.phantoms module

U

u (tomotok.inversions.lame.Algebraic attribute)

update() (tomotok.tools.checkers.AnisotropicDerivativeChecker method)

V

v (tomotok.inversions.lame.Algebraic attribute) VALID_METHODS (tomotok.inversions.FastSelector attribute) (tomotok.inversions.lame.FastSelector attribute) values (tomotok.tools.containers.Reconstruction attribute) (tomotok.tools.containers.Signals attribute) verbose (tomotok.inversions.solvers.cvxpy.CvxpyNNLS property) vertical (tomotok.tools.containers.Magnetics attribute)

vertices (tomotok.geometry.Grid attribute) (tomotok.geometry.grids.Grid attribute) (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) volumes (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property) voxel

W

weighted_squares() (in module tomotok.regularisations.matrices)

Z

zlims (tomotok.geometry.grids.RegularGrid property) (tomotok.geometry.RegularGrid property)